species:   Rhsol
pid:       PID0490
parent:    Rhi-milR-163
paralog:   
locus:     KB317708.1:388298-388375
matures:   ['UUGACCAUGGAGACUGCUUGUG', 'AUGAAGGAGAUCUUCUGGUUGAGG']
srr:       SRR1994871
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram KB317708.1:388298-388375

14 out of bounds
10 alignments
10 proper strand
8 stranded perfect matches

        ************************         **************************           
CUAGAAGCAGUUGACCAUGGAGACUGCUUGUGCUAGCUAAGUUAUGAAGGAGAUCUUCUGGUUGAGGGAGUUUGGCAU
(((((..(..(((((((.(((((((.(((..(((.....)))....))).)).))))))))))))..)..)))))...
----------UUGACCAUGGAGACUGCUUGUG---------------------------------------------- l=22 a=1 c
-------------------------------------------AUGAAGGAGAUCUUCUGGUUGAGG----------- l=24 a=0 c*
----------UUGACCAUGGAGACUGCUUGUG---------------------------------------------- l=22 a=1 ma
-------------------------------------------AUGAAGGAGAUCUUCUGGUUGAGG----------- l=24 a=0 ma*

----------UUGACCAUGGAGACUGCUUGUG---------------------------------------------- l=22 a=1 (c,ma)
----------UUGACCAUGGAGACUGCUUGUGC--------------------------------------------- l=23 a=1 
----------UUGACCAUGGAGACUGCUUGUGCaA------------------------------------------- l=25 a=1 
-----------UGACCAUGGAGACUGCUUG------------------------------------------------ l=19 a=1 
-----------UGACCAUGGAGACUGCUUGUG---------------------------------------------- l=21 a=1 
-----------UGACCAUGGAGACUGCUUGUGC--------------------------------------------- l=22 a=1 
-----------UGACCAUGGAGACUGCUUGUGCU-------------------------------------------- l=23 a=1 
----------------------------------------------AAGGgGAUCUUCUGGUUGAGGGAG-------- l=24 a=1 
----------------------------------------------------AUCUUCUGGUUGAGGGAGUUUGGC-- l=24 a=1 
--------------------------------------------------------UCUGGUUGAGGGAGUUUGGCAU l=22 a=1 

mb-01011
ax-1011011
ku-01
ss-100111101100
fn-011
